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Story didn't get wrapped up - our only dev and writer left the game a few months prior to shutdown, leaving behind a summary of how the rest of the year would have played out. The current story arc would have been resolved, but the story of the Matrix wouldn't have been over. As for the game itself, the final days were something along the lines of a watered down version of the end of beta.
Wait a minute. He wasn't lying! This isn't even a polygraph. Its a seismograph. We've been having an EARTHQUAKE.